If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ), 'gf_id' => 'HOM05D000850', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000850' ), 'data_identifier' => 'HOM05D000850', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000850', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '703', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24200' => 'bna', 'A02p00130' => 'bna', 'A03p32240' => 'bna', 'A03p42200' => 'bna', 'A05p27270' => 'bna', 'A07p16890' => 'bna', 'A09p09560' => 'bna', 'A09p43340' => 'bna', 'A09p44570' => 'bna', 'Aa31LG1G15580' => 'aar', 'Aa31LG1G22930' => 'aar', 'Aa31LG3G17350' => 'aar', 'Aa31LG4G18560' => 'aar', 'Aa31LG5G160' => 'aar', 'Aa31LG8G8040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2737' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2177' => 'aag', 'Actinidia06642' => 'ach', 'Actinidia08419' => 'ach', 'Actinidia11564' => 'ach', 'Actinidia16479' => 'ach', 'Actinidia17228' => 'ach', 'Actinidia21519' => 'ach', 'Actinidia21730' => 'ach', 'Actinidia22640' => 'ach', 'Actinidia23288' => 'ach', 'Actinidia29085' => 'ach', 'Actinidia32124' => 'ach', 'Ah.01g017090' => 'amhyb', 'Ah.02g121830' => 'amhyb', 'AL3G35390' => 'aly', 'AL5G30450' => 'aly', 'AL6G10860' => 'aly', 'AL6G20150' => 'aly', 'AL6G53380' => 'aly', 'AL8G44310' => 'aly', 'Aqoxy4G02454' => 'aox', 'Aqoxy5G01219' => 'aox', 'Aqoxy5G02195' => 'aox', 'Aqoxy6G00899' => 'aox', 'Aqoxy7G01346' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XTB7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88TQBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEL0IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L80AHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXM7CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TI45MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTU11X' => 'arhy', 'AT3G21330' => 'ath', 'AT3G50330' => 'ath', 'AT4G00120' => 'ath', 'AT5G01305' => 'ath', 'AT5G09750' => 'ath', 'AT5G67060' => 'ath', 'ATR0602G283' => 'atr', 'ATR0684G078' => 'atr', 'ATR0789G052' => 'atr', 'ATR1136G091' => 'atr', 'Atru.chr1.3598' => 'acertr', 'Atru.chr13.710' => 'acertr', 'Atru.chr3.313' => 'acertr', 'Atru.chr4.837' => 'acertr', 'Atru.chr8.2287' => 'acertr', 'AUR62003602' => 'cqu', 'AUR62022271' => 'cqu', 'AUR62027424' => 'cqu', 'AUR62031273' => 'cqu', 'AUR62031976' => 'cqu', 'AUR62043211' => 'cqu', 'AUR62043707' => 'cqu', 'BcaB01g00625' => 'bca', 'BcaB01g00626' => 'bca', 'BcaB01g00978' => 'bca', 'BcaB01g02177' => 'bca', 'BcaB01g02178' => 'bca', 'BcaB02g09962' => 'bca', 'BcaB04g19163' => 'bca', 'BcaB04g20075' => 'bca', 'BcaB05g21532' => 'bca', 'BcaB05g21928' => 'bca', 'BcaB05g21929' => 'bca', 'BcaB05g21935' => 'bca', 'BcaB05g23209' => 'bca', 'BcaB06g26228' => 'bca', 'BcaB08g37163' => 'bca', 'BcaB08g37187' => 'bca', 'BcaC01g03508' => 'bca', 'BcaC01g03509' => 'bca', 'BcaC01g06886' => 'bca', 'BcaC03g13072' => 'bca', 'BcaC03g13273' => 'bca', 'BcaC03g18391' => 'bca', 'BcaC04g23190' => 'bca', 'BcaC04g23191' => 'bca', 'BcaC05g28176' => 'bca', 'BcaC06g34783' => 'bca', 'BcaC07g39490' => 'bca', 'BcaC09g50020' => 'bca', 'BolC1t02935H' => 'bol', 'BolC2t06021H' => 'bol', 'BolC2t06366H' => 'bol', 'BolC2t12527H' => 'bol', 'BolC3t16199H' => 'bol', 'BolC3t17450H' => 'bol', 'BolC5t32943H' => 'bol', 'BolC7t42990H' => 'bol', 'BolC8t50156H' => 'bol', 'BolC9t54017H' => 'bol', 'BolC9t59540H' => 'bol', 'BraA01t02332Z' => 'bra', 'BraA02t04695Z' => 'bra', 'BraA02t04998Z' => 'bra', 'BraA03t12394Z' => 'bra', 'BraA03t13373Z' => 'bra', 'BraA05t21619Z' => 'bra', 'BraA07t29415Z' => 'bra', 'BraA09t36603Z' => 'bra', 'BraA09t39803Z' => 'bra', 'BraA09t39917Z' => 'bra', 'C01p29920' => 'bna', 'C02p00230' => 'bna', 'C02p04040' => 'bna', 'C02p64660' => 'bna', 'C03p39280' => 'bna', 'C03p51650' => 'bna', 'C05p42140' => 'bna', 'C07p24700' => 'bna', 'C08p25350' => 'bna', 'C09p11310' => 'bna', 'C09p67770' => 'bna', 'CAN.G1030.14' => 'can', 'CAN.G1143.34' => 'can', 'CAN.G1194.4' => 'can', 'CAN.G267.3' => 'can', 'CAN.G370.57' => 'can', 'CAN.G635.32' => 'can', 'CAN.G635.33' => 'can', 'CANSAT01G1192' => 'cansat', 'CANSAT01G2359' => 'cansat', 'CANSAT35G1543' => 'cansat', 'CANSAT56G1380' => 'cansat', 'CARHR097250' => 'chi', 'CARHR159790' => 'chi', 'CARHR203650' => 'chi', 'CARHR248170' => 'chi', 'CARHR280590' => 'chi', 'Carub.0003s2136' => 'cru', 'Carub.0005s1664' => 'cru', 'Carub.0006s0051' => 'cru', 'Carub.0006s0816' => 'cru', 'Carub.0006s3710' => 'cru', 'Carub.0007s3298' => 'cru', 'Carub.0008s2745' => 'cru', 'Ca_01179_v3' => 'car', 'Ca_07666_v3' => 'car', 'Ca_15943_v3' => 'car', 'Ca_17646_v3' => 'car', 'Ca_22159_v3' => 'car', 'Ca_24765_v3' => 'car', 'CBR_g19472' => 'cbr', 'Cc00_g30020' => 'ccan', 'Cc04_g02340' => 'ccan', 'Cc06_g01040' => 'ccan', 'CDE04G1494' => 'cde', 'CDE06G1570' => 'cde', 'CDE08G0311' => 'cde', 'CDE08G0737' => 'cde', 'CDE12G0669' => 'cde', 'Cfa002822' => 'cfa', 'Cfa003619' => 'cfa', 'Cfa004028' => 'cfa', 'Cfa017165' => 'cfa', 'Cfa018083' => 'cfa', 'Ciclev10003815m.g' => 'ccl', 'Ciclev10013640m.g' => 'ccl', 'Ciclev10026967m.g' => 'ccl', 'Ciclev10026976m.g' => 'ccl', 'CiPaw.01G017500' => 'cil', 'CiPaw.01G228400' => 'cil', 'CiPaw.02G008000' => 'cil', 'CiPaw.02G143300' => 'cil', 'CiPaw.02G143500' => 'cil', 'CiPaw.03G128900' => 'cil', 'CiPaw.09G212500' => 'cil', 'CiPaw.10G158800' => 'cil', 'CiPaw.15G055200' => 'cil', 'CiPaw.16G042400' => 'cil', 'ClCG01G015500' => 'cla', 'ClCG02G012720' => 'cla', 'ClCG04G006850' => 'cla', 'ClCG05G019980' => 'cla', 'ClCG07G013530' => 'cla', 'ClCG08G016020' => 'cla', 'ClCG09G000460' => 'cla', 'COL.COLO4_11430' => 'col', 'COL.COLO4_14022' => 'col', 'COL.COLO4_14496' => 'col', 'COL.COLO4_26529' => 'col', 'COL.COLO4_30562' => 'col', 'Cpa.g.c46440' => 'cpa', 'Cpa.g.sc120.27' => 'cpa', 'Cpa.g.sc131.7' => 'cpa', 'Cpa.g.sc49.31' => 'cpa', 'Cpa.g.sc55.142' => 'cpa', 'CsaV3_2G016810' => 'csa', 'CsaV3_2G026610' => 'csa', 'CsaV3_3G044120' => 'csa', 'CsaV3_4G026430' => 'csa', 'CsaV3_4G034440' => 'csa', 'CsaV3_6G041730' => 'csa', 'CsaV3_7G035000' => 'csa', 'CSS0015370' => 'camsi', 'CSS0025252' => 'camsi', 'CSS0034146' => 'camsi', 'DCAR_001361' => 'dca', 'DCAR_007601' => 'dca', 'DCAR_015369' => 'dca', 'DCAR_016180' => 'dca', 'DCAR_018679' => 'dca', 'DCAR_019446' => 'dca', 'DCAR_020925' => 'dca', 'DCAR_025738' => 'dca', 'DCAR_026367' => 'dca', 'DCAR_031419' => 'dca', 'Dinv03733' => 'din', 'Dinv08457' => 'din', 'Dinv24329' => 'din', 'Dinv29993' => 'din', 'Dinv30411' => 'din', 'Dinv35946' => 'din', 'Dinv39839' => 'din', 'Duzib041G0615' => 'dzi', 'Duzib093G1059' => 'dzi', 'Duzib093G1076' => 'dzi', 'Duzib116G0636' => 'dzi', 'Duzib128G2005' => 'dzi', 'Duzib147G1086' => 'dzi', 'Duzib147G1616' => 'dzi', 'Duzib160G0677' => 'dzi', 'Duzib187G0426' => 'dzi', 'Duzib187G0463' => 'dzi', 'Duzib192G1066' => 'dzi', 'Duzib235G0647' => 'dzi', 'Duzib264G0419' => 'dzi', 'ECA232G3448' => 'eca', 'ECA232G3777' => 'eca', 'ECA238G2099' => 'eca', 'ECA247G3303' => 'eca', 'EL10Ac2g04474' => 'bvu', 'EL10Ac6g15276' => 'bvu', 'EL10Ac9g21165' => 'bvu', 'EL10As7g23743' => 'bvu', 'Eucgr.F00216' => 'egr', 'Eucgr.F03093' => 'egr', 'Eucgr.H01682' => 'egr', 'Eucgr.H02048' => 'egr', 'Eucgr.H04946' => 'egr', 'FAN02G0203' => 'fan', 'FAN02G1765' => 'fan', 'FAN05G3333' => 'fan', 'FAN09G0268' => 'fan', 'FAN09G1713' => 'fan', 'FAN14G2183' => 'fan', 'FAN14G3421' => 'fan', 'FAN15G0590' => 'fan', 'FAN19G1078' => 'fan', 'FAN19G1227' => 'fan', 'FAN20G1352' => 'fan', 'FAN23G1011' => 'fan', 'FAN23G1999' => 'fan', 'FAN24G0118' => 'fan', 'FAN26G2223' => 'fan', 'FAN26G2431' => 'fan', 'FAN27G1802' => 'fan', 'FAN28G0872' => 'fan', 'FAN28G2768' => 'fan', 'FvH4_1g16130' => 'fve', 'FvH4_1g24110' => 'fve', 'FvH4_2g34280' => 'fve', 'FvH4_6g11070' => 'fve', 'FvH4_6g32760' => 'fve', 'Glyma.01G123000' => 'gma', 'Glyma.01G186700' => 'gma', 'Glyma.03G052300' => 'gma', 'Glyma.04G039500' => 'gma', 'Glyma.04G214100' => 'gma', 'Glyma.05G094900' => 'gma', 'Glyma.05G190600' => 'gma', 'Glyma.06G040800' => 'gma', 'Glyma.06G152300' => 'gma', 'Glyma.07G013600' => 'gma', 'Glyma.07G153600' => 'gma', 'Glyma.08G156000' => 'gma', 'Glyma.08G197600' => 'gma', 'Glyma.11G055300' => 'gma', 'Glyma.13G352600' => 'gma', 'Glyma.15G022000' => 'gma', 'Glyma.17G173100' => 'gma', 'Glyma.18G204700' => 'gma', 'Gohir.A02G116600' => 'ghi', 'Gohir.A02G157000' => 'ghi', 'Gohir.A04G094100' => 'ghi', 'Gohir.A05G203400' => 'ghi', 'Gohir.A06G019200' => 'ghi', 'Gohir.A10G063700' => 'ghi', 'Gohir.A10G083800' => 'ghi', 'Gohir.A11G192900' => 'ghi', 'Gohir.D03G023800' => 'ghi', 'Gohir.D03G057400' => 'ghi', 'Gohir.D04G133500' => 'ghi', 'Gohir.D05G206500' => 'ghi', 'Gohir.D06G017600' => 'ghi', 'Gohir.D10G065300' => 'ghi', 'Gohir.D10G106200' => 'ghi', 'Gohir.D11G199600' => 'ghi', 'Gorai.003G025300' => 'gra', 'Gorai.003G060900' => 'gra', 'Gorai.007G213700' => 'gra', 'Gorai.009G212900' => 'gra', 'Gorai.010G020500' => 'gra', 'Gorai.011G069200' => 'gra', 'Gorai.011G116100' => 'gra', 'Gorai.012G117300' => 'gra', 'GSVIVG01009479001' => 'vvi', 'GSVIVG01022120001' => 'vvi', 'GSVIVG01026516001' => 'vvi', 'GSVIVG01030333001' => 'vvi', 'HanXRQChr04g0095941' => 'han', 'HanXRQChr09g0263761' => 'han', 'HanXRQChr09g0267521' => 'han', 'HanXRQChr09g0276041' => 'han', 'HanXRQChr10g0295451' => 'han', 'HanXRQChr12g0381261' => 'han', 'HanXRQChr14g0449101' => 'han', 'HanXRQChr16g0508161' => 'han', 'Haze_15391' => 'cav', 'Haze_15897' => 'cav', 'Haze_18029' => 'cav', 'Haze_21040' => 'cav', 'Haze_25121' => 'cav', 'Hma1.2p1_0360F.1_g135600' => 'hma', 'Hma1.2p1_0528F.1_g172990' => 'hma', 'Hma1.2p1_0909F.1_g235740' => 'hma', 'Hma1.2p1_0978F.1_g243460' => 'hma', 'HPP92_001164' => 'vpl', 'HPP92_002046' => 'vpl', 'HPP92_006478' => 'vpl', 'HPP92_011178' => 'vpl', 'HPP92_015579' => 'vpl', 'HPP92_019274' => 'vpl', 'HPP92_022904' => 'vpl', 'HPP92_026107' => 'vpl', 'Lalb_Chr01g0023191' => 'lal', 'Lalb_Chr05g0226531' => 'lal', 'Lalb_Chr09g0323211' => 'lal', 'Lalb_Chr11g0062601' => 'lal', 'Lalb_Chr13g0296551' => 'lal', 'Lalb_Chr14g0372951' => 'lal', 'Lalb_Chr22g0351651' => 'lal', 'Lalb_Chr23g0267041' => 'lal', 'Lalb_Chr23g0267051' => 'lal', 'Lalb_Chr24g0396211' => 'lal', 'Lalb_Chr25g0280471' => 'lal', 'Lj1g0013624' => 'lja', 'Lj1g0015950' => 'lja', 'Lj1g0026704' => 'lja', 'Lj2C70T8' => 'lonja', 'Lj2g0009558' => 'lja', 'Lj3g0005850' => 'lja', 'Lj3g0024873' => 'lja', 'Lj4C60G1' => 'lonja', 'Lj4g0006021' => 'lja', 'Lj4g0023836' => 'lja', 'Lj4P771T22' => 'lonja', 'Lj5g0002505' => 'lja', 'Lj9C516T25' => 'lonja', 'Lj9C516T26' => 'lonja', 'Lsat_1_v5_gn_1_36620' => 'lsa', 'Lsat_1_v5_gn_2_84020' => 'lsa', 'Lsat_1_v5_gn_3_90620' => 'lsa', 'Lsat_1_v5_gn_4_126721' => 'lsa', 'Lsat_1_v5_gn_4_165621' => 'lsa', 'Lsat_1_v5_gn_4_97221' => 'lsa', 'Lsat_1_v5_gn_8_102320' => 'lsa', 'Manes.04G136500' => 'mes', 'Manes.05G174800' => 'mes', 'Manes.08G094800' => 'mes', 'Manes.11G029700' => 'mes', 'Manes.12G103400' => 'mes', 'Manes.12G153800' => 'mes', 'Manes.13G123700' => 'mes', 'Manes.18G038400' => 'mes', 'Mapoly0024s0106' => 'mpo', 'Mapoly0029s0135' => 'mpo', 'Mapoly0048s0099' => 'mpo', 'Mapoly0073s0051' => 'mpo', 'MBI01_g16595_MAGBIO' => 'mbi', 'MBI03_g05133_MAGBIO' => 'mbi', 'MBI04_g12188_MAGBIO' => 'mbi', 'MBI06_g02570_MAGBIO' => 'mbi', 'MBI09_g19493_MAGBIO' => 'mbi', 'MBI09_g36923_MAGBIO' => 'mbi', 'MBI10_g08560_MAGBIO' => 'mbi', 'MBI10_g35507_MAGBIO' => 'mbi', 'MD01G1002500' => 'mdo', 'MD02G1173400' => 'mdo', 'MD04G1161800' => 'mdo', 'MD08G1098800' => 'mdo', 'MD09G1198300' => 'mdo', 'MD12G1174500' => 'mdo', 'MD15G1081100' => 'mdo', 'MD15G1284900' => 'mdo', 'MD17G1179100' => 'mdo', 'Medtr2g100490' => 'mtr', 'Medtr3g101810' => 'mtr', 'Medtr5g017210' => 'mtr', 'Medtr7g069590' => 'mtr', 'Medtr8g015450' => 'mtr', 'Medtr8g093500' => 'mtr', 'MELO3C008047.2' => 'cme', 'MELO3C010848.2' => 'cme', 'MELO3C013023.2' => 'cme', 'MELO3C016763.2' => 'cme', 'MELO3C020892.2' => 'cme', 'MELO3C024411.2' => 'cme', 'MELO3C026008.2' => 'cme', 'Migut.H00426' => 'egut', 'Migut.H00738' => 'egut', 'Migut.I00979' => 'egut', 'Migut.L02034' => 'egut', 'Migut.N02717' => 'egut', 'MSTRG.11012' => 'ama', 'MSTRG.22255' => 'ama', 'MSTRG.22615' => 'ama', 'MSTRG.23742' => 'ama', 'MSTRG.24337' => 'ama', 'MSTRG.25084' => 'ama', 'MSTRG.26826' => 'ama', 'Nitab4.5_0000287g0160' => 'nta', 'Nitab4.5_0000300g0100' => 'nta', 'Nitab4.5_0000805g0020' => 'nta', 'Nitab4.5_0000877g0020' => 'nta', 'Nitab4.5_0001064g0050' => 'nta', 'Nitab4.5_0001213g0010' => 'nta', 'Nitab4.5_0001580g0110' => 'nta', 'Nitab4.5_0002656g0050' => 'nta', 'Nitab4.5_0003298g0040' => 'nta', 'Nitab4.5_0003677g0030' => 'nta', 'Nitab4.5_0004374g0010' => 'nta', 'Nitab4.5_0004846g0020' => 'nta', 'Nitab4.5_0005144g0030' => 'nta', 'Nitab4.5_0005661g0010' => 'nta', 'Nitab4.5_0011541g0020' => 'nta', 'Nitab4.5_0012558g0010' => 'nta', 'Nn1g04832' => 'nnu', 'Nn2g10928' => 'nnu', 'Nn2g13197' => 'nnu', 'Nn5g28627' => 'nnu', 'Nn5g30276' => 'nnu', 'Nn6g35380' => 'nnu', 'Nn8g38974' => 'nnu', 'Oeu002524.1' => 'oeu', 'Oeu004250.1' => 'oeu', 'Oeu012424.1' => 'oeu', 'Oeu016220.1' => 'oeu', 'Oeu026731.1' => 'oeu', 'Oeu033568.1' => 'oeu', 'Oeu037806.1' => 'oeu', 'Oeu043583.1' => 'oeu', 'Oeu047687.1' => 'oeu', 'Oeu052826.1' => 'oeu', 'Oeu059731.1' => 'oeu', 'Os01g0566800' => 'osa', 'Os01g0831000' => 'osa', 'Os05g0541400' => 'osa', 'Os06g0496400' => 'osa', 'Os08g0108500' => 'osa', 'Os09g0455300' => 'osa', 'Peaxi162Scf00012g00161' => 'pax', 'Peaxi162Scf00038g01110' => 'pax', 'Peaxi162Scf00207g01146' => 'pax', 'Peaxi162Scf00458g00320' => 'pax', 'Peaxi162Scf01073g00009' => 'pax', 'Peaxi162Scf01132g00026' => 'pax', 'Peaxi162Scf06118g00001' => 'pax', 'PGR031G1454' => 'pgr', 'PGR083G2071' => 'pgr', 'PGR102G1173' => 'pgr', 'PGR102G2281' => 'pgr', 'PGR102G3133' => 'pgr', 'PGSC0003DMG400002515' => 'stu', 'PGSC0003DMG400004039' => 'stu', 'PGSC0003DMG400004875' => 'stu', 'PGSC0003DMG400007964' => 'stu', 'PGSC0003DMG400018986' => 'stu', 'PGSC0003DMG400028657' => 'stu', 'Phvul.002G018300' => 'pvu', 'Phvul.002G271000' => 'pvu', 'Phvul.003G243350' => 'pvu', 'Phvul.005G161900' => 'pvu', 'Phvul.008G095100' => 'pvu', 'Phvul.009G065700' => 'pvu', 'Phvul.009G149200' => 'pvu', 'Phvul.010G073400' => 'pvu', 'Phvul.010G143000' => 'pvu', 'Potri.001G191800' => 'ptr', 'Potri.002G125000' => 'ptr', 'Potri.005G060900' => 'ptr', 'Potri.005G138900' => 'ptr', 'Potri.006G102600' => 'ptr', 'Potri.007G044600' => 'ptr', 'Potri.007G108000' => 'ptr', 'Potri.014G027300' => 'ptr', 'Potri.016G120800' => 'ptr', 'Pp3c10_19020' => 'ppa', 'Pp3c14_16620' => 'ppa', 'Pp3c16_21590' => 'ppa', 'Pp3c17_15380' => 'ppa', 'Pp3c1_40040' => 'ppa', 'Pp3c25_13740' => 'ppa', 'Pp3c3_28970' => 'ppa', 'Pp3c4_4040' => 'ppa', 'Pp3c5_19860' => 'ppa', 'Pp3c6_8320' => 'ppa', 'Prupe.1G434000' => 'ppe', 'Prupe.3G054400' => 'ppe', 'Prupe.6G159200' => 'ppe', 'Prupe.6G281600' => 'ppe', 'Prupe.7G132300' => 'ppe', 'Psat0s2264g0040' => 'psa', 'Psat2g167640' => 'psa', 'Psat3g125640' => 'psa', 'Psat4g086640' => 'psa', 'Psat4g195680' => 'psa', 'Psat5g042880' => 'psa', 'Psat5g294600' => 'psa', 'Psat7g046520' => 'psa', 'PSO063G2152' => 'pso', 'PSO170G5768' => 'pso', 'PSO170G6551' => 'pso', 'PSO210G2655' => 'pso', 'PSO210G3100' => 'pso', 'PSO210G3717' => 'pso', 'PSO541G2592' => 'pso', 'PSO541G6023' => 'pso', 'PSO675G4166' => 'pso', 'PSO675G5414' => 'pso', 'PSO675G6593' => 'pso', 'PSO832G3035' => 'pso', 'QL02p004506' => 'qlo', 'QL05p017288' => 'qlo', 'QL05p017587' => 'qlo', 'QL06p029266' => 'qlo', 'QL06p041228' => 'qlo', 'QL06p048768' => 'qlo', 'QL07p034479' => 'qlo', 'RcHm_v2.0_Chr2g0105811' => 'rch', 'RcHm_v2.0_Chr2g0120331' => 'rch', 'RcHm_v2.0_Chr2g0141851' => 'rch', 'RcHm_v2.0_Chr3g0462431' => 'rch', 'RcHm_v2.0_Chr6g0308101' => 'rch', 'Rhsim05G0220700' => 'rsi', 'Rhsim05G0221300' => 'rsi', 'Rhsim05G0221500' => 'rsi', 'Rhsim06G0051300' => 'rsi', 'Rhsim08G0230000' => 'rsi', 'Rhsim10G0116400' => 'rsi', 'Rhsim12G0204200' => 'rsi', 'Sabra01G0150000' => 'sbr', 'Sabra02G0098200' => 'sbr', 'Sabra05G0051300' => 'sbr', 'Sabra05G0111800' => 'sbr', 'Sabra06G0078900' => 'sbr', 'Sabra07G0039500' => 'sbr', 'Sabra07G0088500' => 'sbr', 'Sabra14G0018700' => 'sbr', 'Sabra16G0116900' => 'sbr', 'SalBow4G1732' => 'sbo', 'SalBow6G2520' => 'sbo', 'SalBow6G5486' => 'sbo', 'SalBow7G1691' => 'sbo', 'Sc02g0007240' => 'sci', 'Sc07g0006760' => 'sci', 'Sc10g0007700' => 'sci', 'Sc16g0003900' => 'sci', 'Sc16g0004680' => 'sci', 'Sed0001637' => 'sed', 'Sed0004269' => 'sed', 'Sed0004460' => 'sed', 'Sed0007275' => 'sed', 'Sed0009850' => 'sed', 'Sed0017936' => 'sed', 'Sed0018908' => 'sed', 'Sed0024863' => 'sed', 'Sed0027836' => 'sed', 'Sed0027928' => 'sed', 'SEGI_02134' => 'sgi', 'SEGI_06547' => 'sgi', 'SEGI_09905' => 'sgi', 'SEGI_10364' => 'sgi', 'SEGI_18596' => 'sgi', 'SEGI_20243' => 'sgi', 'SEGI_20902' => 'sgi', 'SEGI_21902' => 'sgi', 'SEGI_25827' => 'sgi', 'SEGI_28071' => 'sgi', 'SEGI_35658' => 'sgi', 'SEGI_36573' => 'sgi', 'SEGI_38761' => 'sgi', 'SGA_v2.0_scaffold110G31203' => 'sas', 'SGA_v2.0_scaffold250G44982' => 'sas', 'SGA_v2.0_scaffold28G11783' => 'sas', 'SGA_v2.0_scaffold71G23735' => 'sas', 'SHI11451' => 'shi', 'SMO165G0109' => 'smo', 'SMO358G0555' => 'smo', 'SMO364G0059' => 'smo', 'Solyc02g090950.1' => 'sly', 'Solyc03g044460.1' => 'sly', 'Solyc03g121240.1' => 'sly', 'Solyc04g078790.3' => 'sly', 'Solyc06g062460.3' => 'sly', 'Solyc09g005070.1' => 'sly', 'Solyc11g005780.3' => 'sly', 'Solyc12g088790.3' => 'sly', 'Sopen02g035600' => 'spe', 'Sopen03g008590' => 'spe', 'Sopen03g040050' => 'spe', 'Sopen04g032390' => 'spe', 'Sopen06g021950' => 'spe', 'Sopen11g001740' => 'spe', 'Sp2g29620' => 'spa', 'Sp3g19390' => 'spa', 'Sp5g11860' => 'spa', 'Sp6g00190' => 'spa', 'Sp6g33650' => 'spa', 'TAR376G0899' => 'tar', 'TAR383G0103' => 'tar', 'TAR623G1104' => 'tar', 'TAR624G0908' => 'tar', 'TAR628G0200' => 'tar', 'TAR636G2080' => 'tar', 'THA.LOC104799493' => 'tha', 'THA.LOC104801512' => 'tha', 'THA.LOC104805923' => 'tha', 'THA.LOC104810554' => 'tha', 'THA.LOC104819236' => 'tha', 'THA.LOC104827166' => 'tha', 'THA.LOC109116795' => 'tha', 'Thecc.01G057400' => 'tca', 'Thecc.01G127700' => 'tca', 'Thecc.05G010900' => 'tca', 'Thecc.06G104800' => 'tca', 'Thecc.08G005200' => 'tca', 'Thhalv10004846m.g' => 'esa', 'Thhalv10011068m.g' => 'esa', 'Thhalv10015330m.g' => 'esa', 'Thhalv10022273m.g' => 'esa', 'Thhalv10029526m.g' => 'esa', 'TPR.G19082' => 'tpr', 'TPR.G24207' => 'tpr', 'TPR.G30707' => 'tpr', 'TPR.G37301' => 'tpr', 'TPR.G40159' => 'tpr', 'TPR.G6589' => 'tpr', 'TPR.G8753' => 'tpr', 'TWI31G0957' => 'twi', 'TWI36G0824' => 'twi', 'TWI53G0778' => 'twi', 'TWI53G1195' => 'twi', 'TWI56G1474' => 'twi', 'TWI73G1009' => 'twi', 'TWI74G0280' => 'twi', 'TWI75G0034' => 'twi', 'TWI79G1207' => 'twi', 'unitig_26.g9332' => 'ugi', 'unitig_699.g19720' => 'ugi', 'unitig_748.g7448' => 'ugi', 'unitig_749.g13676' => 'ugi', 'vmacro18832' => 'vma', 'VMungo0251G2168' => 'vmu', 'VMungo0251G2518' => 'vmu', 'VMungo0331G1627' => 'vmu', 'VMungo0331G2044' => 'vmu', 'VMungo1080G0976' => 'vmu', 'VMungo1215G3221' => 'vmu', 'VMungo1309G1703' => 'vmu', 'VMungo1309G1736' => 'vmu', 'VMungo1383G0223' => 'vmu', 'Zm00001eb037960' => 'zma', 'Zm00001eb100380' => 'zma', 'Zm00001eb148990' => 'zma', 'Zm00001eb155300' => 'zma', 'Zm00001eb159960' => 'zma', 'Zm00001eb174220' => 'zma', 'Zm00001eb174240' => 'zma', 'Zm00001eb174260' => 'zma', 'Zm00001eb174280' => 'zma', 'Zm00001eb176650' => 'zma', 'Zm00001eb260340' => 'zma', 'Zm00001eb294390' => 'zma', 'Zm00001eb314810' => 'zma', 'Zm00001eb356930' => 'zma' ) $gf_id = 'HOM05D000850' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000850' ) $data_identifier = 'HOM05D000850' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 28, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 13, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 13, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 1, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356930' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1